SNP Profiles of IMC 67   View Data

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 Key

 1234567891011121314
_Input profile
CTCCTTCCGGGTAACCCTGGGGAGTTAC
1._IMC_67
_______CC___AG__
2._IMC_67
_______CC___AG__
3._IMC_67
_______CC___AG__
4._IMC_67
_______CC___AG__
5._IMC_67
_______CC___AG__
6._IMC_67
_______CC___AG__
7._IMC_67
_______CC___AG__
8._IMC_67
_______CC___AG__
9._IMC_67
_______CC___AG__
10._RUQ_1056
_______CC___AG__
11._RUQ_1056
_______CC___AG__
12._IMC_67
_______CC___AG__
13._GC-05-082-2-33
_______CC___AG__
14._GC-05-82-2-33
_______CC___AG__
15._GC-05-82-2-33
_______CC___AG__
16._GC-05-82-2-33
_______CC___AG__
17._GC-05-82-2-33
_______CC___AG__
18._IMC67
_______AA___AA__
19._GC-05-82-2-33
_______CC___AG__
20._GC-05-82-2-33
_______CC___AG__
21._RUQ_1056
_______CC___AG__
22._IMC_67_Fld#_152A_Plt#_1
_______CC___AG__
23._IMC_67_Fld#_152B_Plt#_4
_______AC___GG__
 1516171819202122232425262728
_Input profile
AAACCCAACCACAGGGATACCCTTAGCC
1._IMC_67
_____AC_GG_AC____
2._IMC_67
_____AC_GG_AC____
3._IMC_67
_____AC_GG_AC____
4._IMC_67
_____AC_GG_AC____
5._IMC_67
_____AC_GG_AC____
6._IMC_67
_____AC_GG_AC____
7._IMC_67
_____AC_GG_AC____
8._IMC_67
_____AC_GG_AC____
9._IMC_67
_____AC_GG_AC____
10._RUQ_1056
AA____AC_CG_ACCC___
11._RUQ_1056
_____AC_GG_AC____
12._IMC_67
_____AC_GG_AC____
13._GC-05-082-2-33
AA____AC_GG_ACCC___
14._GC-05-82-2-33
AA____AC_GG_ACCC___
15._GC-05-82-2-33
AA____AC_GG_ACCC___
16._GC-05-82-2-33
AA____AC_GG_ACCC___
17._GC-05-82-2-33
AA____AC_GG_ACCC___
18._IMC67
_______GG_ACCC___
19._GC-05-82-2-33
AA____AC_CG_ACGG___
20._GC-05-82-2-33
AA____AC_CG_ACGG___
21._RUQ_1056
AA____AC_CG_ACGG___
22._IMC_67_Fld#_152A_Plt#_1
AA____AC_CG_ACGG___
23._IMC_67_Fld#_152B_Plt#_4
AG____CC_GG_ACGG___
 2930313233343536373839404142
_Input profile
AACGTTGGGGCCTTCCAATTCCGGCGAA
1._IMC_67
AA__GG______CC__AA
2._IMC_67
AA__GG______CC__AA
3._IMC_67
AA__GG______CC__AA
4._IMC_67
AA__GG______CC__AA
5._IMC_67
AA__GG______CC__AA
6._IMC_67
AA__GG______CC__AA
7._IMC_67
AA__GG______CC__AA
8._IMC_67
AA__GG______CC__AA
9._IMC_67
___GG______CC__AA
10._RUQ_1056
__TTGGGG__CC__CC-_AA
11._RUQ_1056
AA__GG______CC__AG
12._IMC_67
AA__GG______CC__AG
13._GC-05-082-2-33
AA_CCGGGG__CC_CGCCGG_AA
14._GC-05-82-2-33
AA_CCGGGG__CC_CGCCGG_AA
15._GC-05-82-2-33
AA_CCGGGG__CC_CGCCGG_AA
16._GC-05-82-2-33
__CCGGGG__CC_CGCCGG_AA
17._GC-05-82-2-33
AA_CCGGGG__CC_CGCC__AA
18._IMC67
__________CG___
19._GC-05-82-2-33
___CCGG__CC_CGGGGG_AA
20._GC-05-82-2-33
___CCGG__CC_CGGGGG_AA
21._RUQ_1056
___CCGG__CC_CGGGGG_AA
22._IMC_67_Fld#_152A_Plt#_1
___CCGG__CC_CGGGGG_AA
23._IMC_67_Fld#_152B_Plt#_4
___CCAA__CC_GGGGGG_AA
 4344454647484950515253545556
_Input profile
CCCCAACCGGCTCCGTAAGTGGATAAGG
1._IMC_67
____GG_CC__GT____
2._IMC_67
____GG_CC__GT____
3._IMC_67
____GG_CC__GT____
4._IMC_67
____GG_CC__GT____
5._IMC_67
____GG_CC__GT____
6._IMC_67
____GG_CC__GT____
7._IMC_67
____GG_CC__GT____
8._IMC_67
____GG_CC__GT____
9._IMC_67
____GG_CC__GT____
10._RUQ_1056
CC________GT____
11._RUQ_1056
____GG_CC__GT____
12._IMC_67
____GG_CC__GT____
13._GC-05-082-2-33
CC___GG_CC__GT____
14._GC-05-82-2-33
CC___GG_CC__GT____
15._GC-05-82-2-33
CC___GG_CC__GT____
16._GC-05-82-2-33
CC___GG_CC__GT____
17._GC-05-82-2-33
CC___GG_CC__GT____
18._IMC67
______________
19._GC-05-82-2-33
____GG____AC____
20._GC-05-82-2-33
____GG____AC____
21._RUQ_1056
____GG____AC____
22._IMC_67_Fld#_152A_Plt#_1
____GG____AC____
23._IMC_67_Fld#_152B_Plt#_4
____GG____AA____
 575859           
_Input profile
GGTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RUQ_1056
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RUQ_1056
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._IMC_67
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-05-082-2-33
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-05-82-2-33
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-05-82-2-33
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-05-82-2-33
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-05-82-2-33
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._IMC67
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-05-82-2-33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-05-82-2-33
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RUQ_1056
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._IMC_67_Fld#_152A_Plt#_1
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._IMC_67_Fld#_152B_Plt#_4
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_67 RUQ_1056

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._IMC_67

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

2._IMC_67

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._IMC_67

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

4._IMC_67

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

5._IMC_67

identical
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

6._IMC_67

identical
13 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

7._IMC_67

identical
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

8._IMC_67

identical
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

9._IMC_67

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

10._IMC_67 RUQ_1056

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._IMC_67 RUQ_1056

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._IMC_67

96.2 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

13._IMC_67 GC-05-082-2-33

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._IMC_67 GC-05-82-2-33

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

15._IMC_67 GC-05-82-2-33

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

16._IMC_67 GC-05-82-2-33

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

17._IMC_67 GC-05-82-2-33

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

18._IMC_67 IMC67

64.3 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

61.8 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._IMC_67 GC-05-82-2-33

61.8 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._IMC_67 RUQ_1056

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

61.8 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

52.9 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527